Motif HL_31147.1 Version HL_31147.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-9 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3B31_001 | 3B31 | 0.6020 | 0 | A | RNA (29-MER) | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 2 | HL_4CUX_041 | 4CUX | 0.5880 | 0 | Z | CrPV IRES | C | 6180 | C | 6181 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6195 | G | 6196 | cWW | ||
| 3 | HL_387D_001 | 387D | 0.0000 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 4 | HL_1VWW_066 | 1VWW | 0.6903 | 4 | 5 | LSU rRNA | G | 4644 | C | 4645 | U | 4646 | G | 4647 | A | 4648 | G | 4649 | G | 4650 | A | 4651 | G | 4652 | C | 4653 | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUAGGUAGU | 1 |
| CCUAGGUAGG | 1 |
| GAAGUGCAAC | 1 |
| CAGCUCCCUCGCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGGUAG | 1 |
| CUAGGUAG | 1 |
| AAGUGCAA | 1 |
| AGCUCCCUCGCU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_31147.1 | Only in the parent motif |
|---|---|---|---|
| HL_33223.1 Compare | HL_3B31_001, HL_4CUX_041 | HL_387D_001, HL_1VWW_066 | HL_2JLT_001 |
| HL_09641.1 Compare | HL_387D_001 | HL_3B31_001, HL_4CUX_041, HL_1VWW_066 | HL_1F27_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_31147.1 | Only in the child motif |
|---|---|---|---|
| HL_31147.2 Compare | HL_387D_001, HL_3B31_001, HL_4CUX_041 | HL_1VWW_066 | HL_4W21_066 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.52 | Avg 0.50 | Max 0.79
Coloring options: