HL_1VX2_018

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

1VX2|1|2|U|890

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15701.1

Basepair signature

cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

1VX2|1|2|U|885
1VX2|1|2|A|886
1VX2|1|2|U|887
1VX2|1|2|U|888
1VX2|1|2|U|889
1VX2|1|2|U|890
1VX2|1|2|G|891
1VX2|1|2|U|892
1VX2|1|2|U|893
1VX2|1|2|G|894
1VX2|1|2|G|895
1VX2|1|2|U|896
1VX2|1|2|U|897
1VX2|1|2|U|898
1VX2|1|2|U|899
1VX2|1|2|C|900
1VX2|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein uS17