Motif HL_15701.1 Version HL_15701.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_019 | 4BPP | 0.4065 | 0 | A | 18S RRNA | C | 808 | A | 809 | U | 810 | U | 811 | U | 812 | U | 813 | A | 814 | U | 815 | U | 816 | G | 817 | G | 818 | U | 819 | U | 820 | C | 821 | U | 822 | U | 823 | G | 824 | cWW | cWW | cwW |
| 2 | HL_1VX2_018 | 1VX2 | 0.0000 | 0 | 2 | 18S ribosomal RNA | U | 885 | A | 886 | U | 887 | U | 888 | U | 889 | U | 890 | G | 891 | U | 892 | U | 893 | G | 894 | G | 895 | U | 896 | U | 897 | U | 898 | U | 899 | C | 900 | G | 901 | cWW | ncWW | |
| 3 | HL_1VWW_060 | 1VWW | 0.6234 | -11 | 5 | 28S ribosomal RNA | G | 4347 | A | 4348 | C | 4350 | U | 4351 | U | 4352 | U | 4353 | G | 4355 | G | 4356 | G | 4357 | U | 4358 | U | 4359 | U | 4360 | U | 4361 | A | 4362 | A | 4363 | G | 4364 | C | 4365 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUUUAUUGGUUCUUG | 1 |
| UAUUUUGUUGGUUUUCG | 1 |
| CGUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUUUAUUGGUUCUU | 1 |
| AUUUUGUUGGUUUUC | 1 |
| GUGA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_15701.1 | Only in the parent motif |
|---|---|---|---|
| HL_23195.1 Compare | HL_4BPP_019 | HL_1VWW_060, HL_1VX2_018 |
Children motifs
| Child motif | Common motif instances | Only in HL_15701.1 | Only in the child motif |
|---|---|---|---|
| HL_42161.1 Compare | HL_4BPP_019 | HL_1VWW_060, HL_1VX2_018 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.41 | Avg 0.38 | Max 0.69
Coloring options: