HL_1VX3_049

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

1VX3|1|5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_049 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.2023

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

1VX3|1|5|G|3757
1VX3|1|5|U|3758
1VX3|1|5|A|3759
1VX3|1|5|A|3760
1VX3|1|5|C|3761
1VX3|1|5|U|3762
1VX3|1|5|A|3763
1VX3|1|5|U|3764
1VX3|1|5|G|3765
1VX3|1|5|A|3766
1VX3|1|5|C|3767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains