HL_1VX6_019

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

1VX6|1|A|U|889

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX6_019 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3045

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

1VX6|1|A|C|883
1VX6|1|A|A|884
1VX6|1|A|A|885
1VX6|1|A|A|888
1VX6|1|A|U|889
1VX6|1|A|G|890

Current chains

Chain A

28S ribosomal RNA

Nearby chains