HL_1VX6_031
3D structure
- PDB id
- 1VX6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGUGAUUG
- Length
- 9 nucleotides
- Bulged bases
- 1VX6|1|A|G|1656, 1VX6|1|A|U|1660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08494.1
- Basepair signature
- cWW-cWW-R-R
- Number of instances in this motif group
- 2
Unit IDs
1VX6|1|A|C|1654
1VX6|1|A|U|1655
1VX6|1|A|G|1656
1VX6|1|A|U|1657
1VX6|1|A|G|1658
1VX6|1|A|A|1659
1VX6|1|A|U|1660
1VX6|1|A|U|1661
1VX6|1|A|G|1662
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: