3D structure

PDB id
1VX6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGUGAUUG
Length
9 nucleotides
Bulged bases
1VX6|1|A|G|1656, 1VX6|1|A|U|1660
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08494.1
Basepair signature
cWW-cWW-R-R
Number of instances in this motif group
2

Unit IDs

1VX6|1|A|C|1654
1VX6|1|A|U|1655
1VX6|1|A|G|1656
1VX6|1|A|U|1657
1VX6|1|A|G|1658
1VX6|1|A|A|1659
1VX6|1|A|U|1660
1VX6|1|A|U|1661
1VX6|1|A|G|1662

Current chains

Chain A
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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