Motif HL_08494.1 Version HL_08494.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_031 | 1VX6 | 0.0000 | 2 | A | LSU rRNA | C | 1654 | U | 1655 | U | 1657 | G | 1658 | A | 1659 | U | 1661 | G | 1662 | cWW | cwW |
| 2 | HL_3QSY_002 | 3QSY | 0.7377 | 2 | D | tRNA | G | 31 | C | 32 | C | 34 | A | 35 | U | 36 | A | 38 | C | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUGAUUG | 1 |
| GCUCAUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUGAUU | 1 |
| CUCAUAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_08494.1 | Only in the parent motif |
|---|---|---|---|
| HL_29892.1 Compare | HL_1VX6_031 | HL_3QSY_002 | HL_1VX2_006 |
| HL_89482.2 Compare | HL_3QSY_002 | HL_1VX6_031 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.74 | Avg 0.37 | Max 0.74
Coloring options: