HL_1VX6_042

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAACAG

Length

7 nucleotides

Bulged bases (A, C, G, U)

2133C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74411.3

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

18

Unit IDs

1VX6|1|A|U|2129
1VX6|1|A|U|2130
1VX6|1|A|A|2131
1VX6|1|A|A|2132
1VX6|1|A|C|2133
1VX6|1|A|A|2134
1VX6|1|A|G|2135

Current chains

Chain A

28S ribosomal RNA

Nearby chains