Motif HL_74411.3 Version HL_74411.3 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QLM_001 | 4QLM | 0.7882 | 0 | GNRA | A | cyclic di-AMP riboswitch | C | 54 | G | 55 | A | 56 | A | 57 | A | 58 | G | 59 | cWW | ntSH |
| 2 | HL_3Q1Q_010 | 3Q1Q | 0.5636 | 0 | C | TRNA (PHE) | G | 37 | C | 38 | A | 39 | C | 40 | C | 41 | C | 42 | cWW | ntWH | |
| 3 | HL_4IOA_045 | 4IOA | 0.5061 | 1 | GNRA | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
| 4 | HL_3D0U_003 | 3D0U | 0.5081 | 1 | GNRA | A | Lysine Riboswitch RNA | G | 121 | G | 122 | A | 123 | A | 124 | A | 126 | C | 127 | cWW | tSH |
| 5 | HL_4AL5_001 | 4AL5 | 0.2441 | 1 | GNRA | B | RNA (20-mer) | C | 10 | G | 11 | U | 12 | A | 13 | A | 15 | G | 16 | cWW | tSH |
| 6 | HL_4BPP_030 | 4BPP | 0.0000 | 1 | A | 18S RRNA | U | 1330 | A | 1331 | A | 1332 | A | 1333 | A | 1335 | A | 1336 | cWW | ntSH | |
| 7 | HL_2QBG_043 | 2QBG | 0.2154 | 1 | B | 23S rRNA | A | 1630 | G | 1631 | A | 1632 | G | 1633 | A | 1635 | U | 1636 | cWW | tSH | |
| 8 | HL_1XJR_001 | 1XJR | 0.2875 | 1 | GNRA | A | s2m RNA | G | 21 | G | 22 | A | 23 | G | 24 | A | 26 | C | 27 | cWW | tSH |
| 9 | HL_4W21_043 | 4W21 | 0.2463 | 1 | 5 | 28S ribosomal RNA | U | 2810 | G | 2811 | A | 2812 | A | 2813 | A | 2815 | G | 2816 | cWW | ||
| 10 | HL_3U5H_042 | 3U5H | 0.2647 | 1 | 5 | 25S rRNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | cWW | tSH | |
| 11 | HL_4CUV_042 | 4CUV | 0.2777 | 1 | 1 | 25S RRNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | cWW | ntSH | |
| 12 | HL_1VX6_042 | 1VX6 | 0.2792 | 1 | A | 28S ribosomal RNA | U | 2129 | U | 2130 | A | 2131 | A | 2132 | A | 2134 | G | 2135 | cWW | ntSH | |
| 13 | HL_4A1B_041 | 4A1B | 0.3069 | 1 | 1 | 26S RRNA | U | 1886 | U | 1887 | A | 1888 | G | 1889 | A | 1891 | G | 1892 | cWW | ntSH | |
| 14 | HL_1S72_016 | 1S72 | 0.2830 | 1 | GNRA (H) | 0 | LSU rRNA | U | 493 | C | 494 | A | 495 | G | 496 | A | 498 | G | 499 | cWW | ntSH |
| 15 | HL_1S72_022 | 1S72 | 0.5589 | 0 | GNRA (H) | 0 | LSU rRNA | U | 733 | U | 734 | C | 735 | A | 736 | A | 737 | G | 738 | cWW | |
| 16 | HL_4A1B_052 | 4A1B | 0.5369 | 0 | 1 | 26S RRNA | U | 2531 | G | 2532 | C | 2533 | A | 2534 | A | 2535 | A | 2536 | cWW | ntSH | |
| 17 | HL_4IOA_004 | 4IOA | 0.6757 | 0 | GNRA variation | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ntSH |
| 18 | HL_1VX6_072 | 1VX6 | 0.7063 | 0 | C | 5.8S ribosomal RNA | U | 77 | U | 78 | G | 79 | C | 80 | A | 81 | G | 82 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAACAG | 3 |
| CGAAAG | 1 |
| GCACCC | 1 |
| CGAACAG | 1 |
| GGAAUAC | 1 |
| CGUAUAG | 1 |
| UAAAUAA | 1 |
| AGAGAAU | 1 |
| GGAGUAC | 1 |
| UUAACAG | 1 |
| UUAGCAG | 1 |
| UCAGAAG | 1 |
| UUCAAG | 1 |
| UGCAAA | 1 |
| CGUAAG | 1 |
| UUGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACA | 4 |
| GAAA | 1 |
| CACC | 1 |
| GAAUA | 1 |
| GUAUA | 1 |
| AAAUA | 1 |
| GAGAA | 1 |
| GAGUA | 1 |
| UAACA | 1 |
| UAGCA | 1 |
| CAGAA | 1 |
| UCAA | 1 |
| GCAA | 1 |
| GUAA | 1 |
| UGCA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_74411.3 | Only in the parent motif |
|---|---|---|---|
| HL_74411.2 Compare | HL_2QBG_043, HL_4QLM_001, HL_4IOA_045, HL_1S72_022, HL_4A1B_052, HL_4A1B_041, HL_4AL5_001, HL_4CUV_042, HL_3D0U_003, HL_1VX6_042, HL_4IOA_004, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_1VX6_072, HL_4BPP_030, HL_1S72_016 | HL_4W21_043 | HL_1VWW_043 |
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- GNRA (5)
- GNRA (H) (2)
- GNRA variation (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.09 | Avg 0.53 | Max 1.00
Coloring options: