HL_1VX6_061

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUCCUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46489.7

Basepair signature

cWW-tSH-R-R-R-R

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|C|3199
1VX6|1|A|G|3200
1VX6|1|A|C|3201
1VX6|1|A|U|3202
1VX6|1|A|C|3203
1VX6|1|A|C|3204
1VX6|1|A|U|3205
1VX6|1|A|A|3206
1VX6|1|A|G|3207

Current chains

Chain A

28S ribosomal RNA

Nearby chains