Motif HL_46489.7 Version HL_46489.7 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_051 | 1VW3 | 0.2788 | 1 | A | LSU rRNA | A | 2737 | G | 2738 | A | 2740 | G | 2741 | A | 2742 | U | 2743 | A | 2744 | U | 2745 | cWW | tSH |
| 2 | HL_2QBG_062 | 2QBG | 0.2347 | 1 | B | LSU rRNA | A | 2471 | G | 2472 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH |
| 3 | HL_4QCN_058 | 4QCN | 0.1566 | 1 | A | LSU rRNA | C | 2483 | G | 2484 | C | 2486 | C | 2487 | A | 2488 | C | 2489 | A | 2490 | G | 2491 | cWW | tSH |
| 4 | HL_3U5H_062 | 3U5H | 0.1346 | 1 | 5 | LSU rRNA | C | 2840 | G | 2841 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
| 5 | HL_4A1B_061 | 4A1B | 0.0000 | 1 | 1 | LSU rRNA | A | 2828 | G | 2829 | U | 2831 | C | 2832 | A | 2833 | U | 2834 | A | 2835 | U | 2836 | cWW | tSH |
| 6 | HL_4IOA_059 | 4IOA | 0.1319 | 1 | X | LSU rRNA | A | 2450 | G | 2451 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 7 | HL_1S72_062 | 1S72 | 0.1860 | 1 | 0 | LSU rRNA | A | 2506 | G | 2507 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
| 8 | HL_4W21_061 | 4W21 | 0.3759 | 1 | 5 | LSU rRNA | C | 4417 | G | 4418 | U | 4420 | C | 4421 | A | 4422 | U | 4423 | A | 4424 | G | 4425 | ncWW | ntSH |
| 9 | HL_1VX6_061 | 1VX6 | 0.4054 | 1 | A | LSU rRNA | C | 3199 | G | 3200 | U | 3202 | C | 3203 | C | 3204 | U | 3205 | A | 3206 | G | 3207 | cWW | tSH |
| 10 | HL_4CUV_062 | 4CUV | 0.4222 | 1 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUCAUAG | 3 |
| AGUUCAUAU | 2 |
| AGUAGAUAU | 1 |
| CGUCCACAG | 1 |
| AGUCCAUAU | 1 |
| AGCACAUAU | 1 |
| CGCUCCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 5 |
| GUAGAUA | 1 |
| GUCCACA | 1 |
| GUCCAUA | 1 |
| GCACAUA | 1 |
| GCUCCUA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46489.7 | Only in the parent motif |
|---|---|---|---|
| HL_46489.6 Compare | HL_1VW3_051, HL_4CUV_062, HL_1S72_062, HL_4A1B_061, HL_4QCN_058, HL_2QBG_062, HL_1VX6_061, HL_4IOA_059, HL_3U5H_062 | HL_4W21_061 |
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.28 | Max 0.48
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