HL_1VX6_077

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCAAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX6_077 not in the Motif Atlas

Geometric match to HL_9DFE_001

Geometric discrepancy: 0.2162

The information below is about HL_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1VX6|1|C|C|51
1VX6|1|C|A|52
1VX6|1|C|G|53
1VX6|1|C|C|54
1VX6|1|C|A|55
1VX6|1|C|A|56
1VX6|1|C|A|57
1VX6|1|C|A|58
1VX6|1|C|U|59
1VX6|1|C|G|60

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA