HL_1VY4_021
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 1VY4|1|AA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0935
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VY4|1|AA|G|963
1VY4|1|AA|A|964
1VY4|1|AA|A|965
1VY4|1|AA|G|966
1VY4|1|AA|C|967
1VY4|1|AA|A|968
1VY4|1|AA|A|969
1VY4|1|AA|C|970
1VY4|1|AA|G|971
1VY4|1|AA|C|972
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14 type Z
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- Transfer RNA; tRNA
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