HL_1VY4_058

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1VY4|1|BA|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_058 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0339

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

1VY4|1|BA|U|566
1VY4|1|BA|A|567
1VY4|1|BA|U|568
1VY4|1|BA|U|569
1VY4|1|BA|G|570
1VY4|1|BA|A|571
1VY4|1|BA|A|572
1VY4|1|BA|G|573
1VY4|1|BA|C|574
1VY4|1|BA|A|575

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L15

Chain BV

50S ribosomal protein L21