HL_1VY4_105

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VY4|1|BA|G|2751, 1VY4|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_105 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0329

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

1VY4|1|BA|C|2745
1VY4|1|BA|U|2746
1VY4|1|BA|G|2747
1VY4|1|BA|A|2748
1VY4|1|BA|A|2749
1VY4|1|BA|A|2750
1VY4|1|BA|G|2751
1VY4|1|BA|C|2752
1VY4|1|BA|A|2753
1VY4|1|BA|U|2754
1VY4|1|BA|C|2755
1VY4|1|BA|U|2756
1VY4|1|BA|A|2757
1VY4|1|BA|A|2758
1VY4|1|BA|G|2759

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6