Motif HL_56677.7 Version HL_56677.7 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-12 | 3-11 | 4-9 | 4-10 | 5-8 | 6-7 | 10-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ANN_001 | 2ANN | 0.8467 | 4 | B | RNA (25-mer) | C | 5 | G | 6 | G | 7 | A | 8 | U | 9 | C | 10 | A | 15 | C | 16 | C | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH | tSH | ncBW | ||||||
| 2 | HL_7A0S_065 | 7A0S | 0.2344 | 2 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | ncWW | tWH | tSH | tHW | ntHW | cWH | ||||
| 3 | HL_7RQB_066 | 7RQB | 0.1356 | 2 | 1A | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | ||
| 4 | HL_5J7L_199 | 5J7L | 0.1048 | 2 | DA | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | ||
| 5 | HL_4V9F_068 | 4V9F | 0.0977 | 2 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | ||
| 6 | HL_4WF9_062 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 2772 | U | 2773 | G | 2774 | A | 2775 | A | 2776 | A | 2777 | C | 2779 | A | 2780 | U | 2781 | U | 2783 | A | 2784 | A | 2785 | G | 2786 | cWW | tWH | tSH | tHW | tHW | ntSW | ncWH | |||
| 7 | HL_8C3A_068 | 8C3A | 0.1196 | 2 | 1 | LSU rRNA | C | 3082 | U | 3083 | G | 3084 | A | 3085 | A | 3086 | C | 3087 | C | 3089 | C | 3090 | U | 3091 | U | 3093 | A | 3094 | A | 3095 | G | 3096 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | ||
| 8 | HL_5TBW_067 | 5TBW | 0.1271 | 2 | 1 | LSU rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAGCAUCUAAG | 4 |
| CUGAACGCCUCUAAG | 2 |
| CGGAUCAGUCACCCAAG | 1 |
| CUGAACGCAUCUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGCAUCUAA | 4 |
| UGAACGCCUCUAA | 2 |
| GGAUCAGUCACCCAA | 1 |
| UGAACGCAUCUAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.86
Coloring options: