3D structure

PDB id
1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGAUGCAAAC
Length
10 nucleotides
Bulged bases
1VY5|1|BA|U|747, 1VY5|1|BA|A|751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VY5_063 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.0492
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

1VY5|1|BA|G|744
1VY5|1|BA|G|745
1VY5|1|BA|A|746
1VY5|1|BA|U|747
1VY5|1|BA|G|748
1VY5|1|BA|C|749
1VY5|1|BA|A|750
1VY5|1|BA|A|751
1VY5|1|BA|A|752
1VY5|1|BA|C|753

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L32
Chain B7
50S ribosomal protein L34
Chain BE
50S ribosomal protein L3
Chain BW
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2615 s