Motif HL_39334.6 Version HL_39334.6 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_020 | 8C3A | 0.1321 | 3 | 1 | LSU rRNA | A | 872 | C | 873 | G | 874 | G | 876 | C | 877 | A | 878 | U | 881 | cWW | tSW | cWS |
| 2 | HL_5TBW_020 | 5TBW | 0.1211 | 3 | 1 | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | ncWS |
| 3 | HL_4V9F_024 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
| 4 | HL_7RQB_023 | 7RQB | 0.1253 | 3 | 1A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
| 5 | HL_4WF9_023 | 4WF9 | 0.2335 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS |
| 6 | HL_7A0S_022 | 7A0S | 0.2356 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 2 |
| UCCUACAAUA | 1 |
| GGAUGCAAAC | 1 |
| CGUUGAAAAG | 1 |
| UGCUGAAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 2 |
| CCUACAAU | 1 |
| GAUGCAAA | 1 |
| GUUGAAAA | 1 |
| GCUGAAAC | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWS-tSW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.15 | Max 0.24
Coloring options: