Motif HL_39334.6 Version HL_39334.6 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	5-7
1	HL_8C3A_020	8C3A	0.1321	3	1	LSU rRNA	A	872	C	873	G	874	G	876	C	877	A	878	U	881	cWW	tSW	cWS
2	HL_5TBW_020	5TBW	0.1211	3	1	LSU rRNA	A	876	C	877	G	878	G	880	C	881	A	882	U	885	cWW	tSW	ncWS
3	HL_4V9F_024	4V9F	0.0000	3	0	LSU rRNA	U	837	C	838	C	839	A	841	C	842	A	843	A	846	cWW	tSW	cWS
4	HL_7RQB_023	7RQB	0.1253	3	1A	LSU rRNA	G	744	G	745	A	746	G	748	C	749	A	750	C	753	cWW	tSW	cWS
5	HL_4WF9_023	4WF9	0.2335	3	X	LSU rRNA	C	789	G	790	U	791	G	793	A	794	A	795	G	798	cWW	tSW	cWS
6	HL_7A0S_022	7A0S	0.2356	3	X	LSU rRNA	U	757	G	758	C	759	G	761	A	762	A	763	A	766	cWW	tSW	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
ACGUGCAAAU	2
UCCUACAAUA	1
GGAUGCAAAC	1
CGUUGAAAAG	1
UGCUGAAACA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CGUGCAAA	2
CCUACAAU	1
GAUGCAAA	1
GUUGAAAA	1
GCUGAAAC	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-cWS-tSW-F-F
Heat map statistics: Min 0.08 | Avg 0.15 | Max 0.24

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