HL_1VY5_084

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

1VY5|1|BA|A|1780, 1VY5|1|BA|C|1781, 1VY5|1|BA|C|1782, 1VY5|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_084 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0466

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

1VY5|1|BA|U|1777
1VY5|1|BA|U|1778
1VY5|1|BA|U|1779
1VY5|1|BA|A|1780
1VY5|1|BA|C|1781
1VY5|1|BA|C|1782
1VY5|1|BA|A|1783
1VY5|1|BA|A|1784
1VY5|1|BA|A|1785
1VY5|1|BA|A|1786
1VY5|1|BA|A|1787

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BW

50S ribosomal protein L22