HL_1VY5_215

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VY5|1|DA|G|2751, 1VY5|1|DA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_215 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0964

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

1VY5|1|DA|C|2745
1VY5|1|DA|U|2746
1VY5|1|DA|G|2747
1VY5|1|DA|A|2748
1VY5|1|DA|A|2749
1VY5|1|DA|A|2750
1VY5|1|DA|G|2751
1VY5|1|DA|C|2752
1VY5|1|DA|A|2753
1VY5|1|DA|U|2754
1VY5|1|DA|C|2755
1VY5|1|DA|U|2756
1VY5|1|DA|A|2757
1VY5|1|DA|A|2758
1VY5|1|DA|G|2759

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6