HL_1VY6_058

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

1VY6|1|BA|U|747, 1VY6|1|BA|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_058 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0626

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

1VY6|1|BA|G|744
1VY6|1|BA|G|745
1VY6|1|BA|A|746
1VY6|1|BA|U|747
1VY6|1|BA|G|748
1VY6|1|BA|C|749
1VY6|1|BA|A|750
1VY6|1|BA|A|751
1VY6|1|BA|A|752
1VY6|1|BA|C|753

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain B7

50S ribosomal protein L34

Chain BE

50S ribosomal protein L3

Chain BW

50S ribosomal protein L22