HL_1VY6_100

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VY6|1|BA|G|2751, 1VY6|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_100 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0563

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

1VY6|1|BA|C|2745
1VY6|1|BA|U|2746
1VY6|1|BA|G|2747
1VY6|1|BA|A|2748
1VY6|1|BA|A|2749
1VY6|1|BA|A|2750
1VY6|1|BA|G|2751
1VY6|1|BA|C|2752
1VY6|1|BA|A|2753
1VY6|1|BA|U|2754
1VY6|1|BA|C|2755
1VY6|1|BA|U|2756
1VY6|1|BA|A|2757
1VY6|1|BA|A|2758
1VY6|1|BA|G|2759

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6