HL_1VY7_072

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

1VY7|1|BA|C|1493, 1VY7|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_072 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.0683

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

1VY7|1|BA|G|1492
1VY7|1|BA|C|1493
1VY7|1|BA|A|1494
1VY7|1|BA|A|1495
1VY7|1|BA|A|1496
1VY7|1|BA|U|1497
1VY7|1|BA|C|1498

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2