HL_1VY7_139
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GG(5MC)UCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- 1VY7|1|CX|C|34
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY7_139 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3343
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1VY7|1|CX|G|30
1VY7|1|CX|G|31
1VY7|1|CX|5MC|32
1VY7|1|CX|U|33
1VY7|1|CX|C|34
1VY7|1|CX|A|35
1VY7|1|CX|U|36
1VY7|1|CX|A|37
1VY7|1|CX|A|38
1VY7|1|CX|C|39
1VY7|1|CX|C|40
Current chains
- Chain CX
- P-site tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S ribosomal protein S9
- Chain CM
- 30S ribosomal protein S13
- Chain CV
- mRNA
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