HL_1VY7_188

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

1VY7|1|DA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_188 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2001

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1VY7|1|DA|G|1910
1VY7|1|DA|U|1911
1VY7|1|DA|A|1912
1VY7|1|DA|A|1913
1VY7|1|DA|C|1914
1VY7|1|DA|U|1915
1VY7|1|DA|A|1916
1VY7|1|DA|U|1917
1VY7|1|DA|A|1918
1VY7|1|DA|A|1919
1VY7|1|DA|C|1920

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CX

Transfer RNA; tRNA