HL_1VY7_217

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGACGGAAAUCCGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_217 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3514

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

1VY7|1|DA|G|2300
1VY7|1|DA|C|2301
1VY7|1|DA|G|2302
1VY7|1|DA|G|2303
1VY7|1|DA|G|2304
1VY7|1|DA|A|2305
1VY7|1|DA|C|2306
1VY7|1|DA|G|2307
1VY7|1|DA|G|2308
1VY7|1|DA|A|2309
1VY7|1|DA|A|2310
1VY7|1|DA|A|2311
1VY7|1|DA|U|2312
1VY7|1|DA|C|2313
1VY7|1|DA|C|2314
1VY7|1|DA|G|2315
1VY7|1|DA|C|2316

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5