HL_1W2B_032

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1W2B|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_032 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0725

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1W2B|1|0|A|1274
1W2B|1|0|C|1275
1W2B|1|0|U|1276
1W2B|1|0|C|1277
1W2B|1|0|A|1278
1W2B|1|0|U|1279
1W2B|1|0|A|1280
1W2B|1|0|C|1281
1W2B|1|0|U|1282

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L18E

Chain V

50S RIBOSOMAL PROTEIN L30P

Chain X

50S RIBOSOMAL PROTEIN L32E