HL_1W2B_039

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_039 not in the Motif Atlas

Homologous match to HL_4V9F_039

Geometric discrepancy: 0.0753

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1W2B|1|0|C|1594
1W2B|1|0|G|1595
1W2B|1|0|U|1596
1W2B|1|0|A|1597
1W2B|1|0|A|1598
1W2B|1|0|U|1599
1W2B|1|0|G|1600

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L19E

Chain Y

50S RIBOSOMAL PROTEIN L37AE