HL_1W2B_047

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCUAGUAACAA

Length

11 nucleotides

Bulged bases

1W2B|1|0|A|1836, 1W2B|1|0|G|1837, 1W2B|1|0|U|1838, 1W2B|1|0|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_047 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.0753

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1W2B|1|0|U|1833
1W2B|1|0|C|1834
1W2B|1|0|U|1835
1W2B|1|0|A|1836
1W2B|1|0|G|1837
1W2B|1|0|U|1838
1W2B|1|0|A|1839
1W2B|1|0|A|1840
1W2B|1|0|C|1841
1W2B|1|0|A|1842
1W2B|1|0|A|1843

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain Z

RIBOSOMAL PROTEIN L37E