HL_1XNQ_006

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

1XNQ|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNQ_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0534

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1XNQ|1|A|G|259
1XNQ|1|A|G|260
1XNQ|1|A|U|261
1XNQ|1|A|A|262
1XNQ|1|A|A|263
1XNQ|1|A|U|264
1XNQ|1|A|G|265
1XNQ|1|A|G|266
1XNQ|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein S17

Chain T

Ribosomal protein S20