HL_1YIT_008

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_008 not in the Motif Atlas

Homologous match to HL_4V9F_008

Geometric discrepancy: 0.0563

The information below is about HL_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

1YIT|1|0|C|217
1YIT|1|0|C|218
1YIT|1|0|G|219
1YIT|1|0|C|220
1YIT|1|0|G|221
1YIT|1|0|A|222
1YIT|1|0|G|223

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L44E

Chain L

50S RIBOSOMAL PROTEIN L15P