HL_1YIT_032

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1YIT|1|0|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_032 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.0547

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1YIT|1|0|A|1274
1YIT|1|0|C|1275
1YIT|1|0|U|1276
1YIT|1|0|C|1277
1YIT|1|0|A|1278
1YIT|1|0|U|1279
1YIT|1|0|A|1280
1YIT|1|0|C|1281
1YIT|1|0|U|1282

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L18E

Chain Y

50S RIBOSOMAL PROTEIN L32E