HL_1YIT_071
3D structure
- PDB id
- 1YIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUCCCG
- Length
- 7 nucleotides
- Bulged bases
- 1YIT|1|9|C|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1YIT_071 not in the Motif Atlas
- Geometric match to HL_1MJI_002
- Geometric discrepancy: 0.1158
- The information below is about HL_1MJI_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59381.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
1YIT|1|9|C|37
1YIT|1|9|A|38
1YIT|1|9|U|39
1YIT|1|9|C|40
1YIT|1|9|C|41
1YIT|1|9|C|42
1YIT|1|9|G|43
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S RIBOSOMAL PROTEIN L5P
- Chain N
- 50S RIBOSOMAL PROTEIN L18P
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