HL_1YJN_010

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGAAUA

Length

8 nucleotides

Bulged bases

1YJN|1|0|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJN_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0545

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

1YJN|1|0|U|312
1YJN|1|0|U|313
1YJN|1|0|G|314
1YJN|1|0|G|315
1YJN|1|0|A|316
1YJN|1|0|A|317
1YJN|1|0|U|318
1YJN|1|0|A|319

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32E