HL_1YJN_012
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGACAACC
- Length
- 9 nucleotides
- Bulged bases
- 1YJN|1|0|G|336, 1YJN|1|0|A|337, 1YJN|1|0|C|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1YJN_012 not in the Motif Atlas
- Homologous match to HL_4V9F_012
- Geometric discrepancy: 0.0598
- The information below is about HL_4V9F_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
1YJN|1|0|G|334
1YJN|1|0|U|335
1YJN|1|0|G|336
1YJN|1|0|A|337
1YJN|1|0|C|338
1YJN|1|0|A|339
1YJN|1|0|A|340
1YJN|1|0|C|341
1YJN|1|0|C|342
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain T
- 50S ribosomal protein L24P
Coloring options: