HL_1YJW_030

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1YJW|1|0|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJW_030 not in the Motif Atlas

Geometric match to HL_3CUL_003

Geometric discrepancy: 0.3122

The information below is about HL_3CUL_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1YJW|1|0|C|1168
1YJW|1|0|U|1169
1YJW|1|0|U|1170
1YJW|1|0|A|1171
1YJW|1|0|G|1172
1YJW|1|0|A|1173
1YJW|1|0|A|1174
1YJW|1|0|G|1175
1YJW|1|0|C|1176
1YJW|1|0|A|1177
1YJW|1|0|G|1178

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P