HL_1YJW_064

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GU(OMU)(OMG)UUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YJW_064 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3846

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1YJW|1|0|G|2585
1YJW|1|0|U|2586
1YJW|1|0|OMU|2587
1YJW|1|0|OMG|2588
1YJW|1|0|U|2589
1YJW|1|0|U|2590
1YJW|1|0|C|2591
1YJW|1|0|G|2592
1YJW|1|0|C|2593

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain K

50S RIBOSOMAL PROTEIN L14P