HL_1YNG_015

3D structure

PDB id

1YNG (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAUAAUUUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YNG_015 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.3638

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

1YNG|15|A|U|11
1YNG|15|A|A|12
1YNG|15|A|U|13
1YNG|15|A|A|14
1YNG|15|A|A|15
1YNG|15|A|U|16
1YNG|15|A|U|17
1YNG|15|A|U|18
1YNG|15|A|G|19
1YNG|15|A|A|20

Current chains

Chain A

apolipoprotein B mRNA

Nearby chains