1YNG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1YNG_001 | 1/A/11:20 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_1YNG_002 | 2/A/11:20 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNG_003 | 3/A/11:20 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNG_004 | 4/A/11:20 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNG_005 | 5/A/11:20 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_1YNG_006 | 6/A/11:20 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_1YNG_007 | 7/A/11:20 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_1YNG_008 | 8/A/11:20 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_1YNG_009 | 9/A/11:20 | tRNA D-loop | geometric HL_2AZX_004 NA | |
| HL_1YNG_010 | 10/A/11:20 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_1YNG_011 | 11/A/11:20 | No text annotation | ||
| HL_1YNG_012 | 12/A/11:20 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_1YNG_013 | 13/A/11:20 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.3 | |
| HL_1YNG_014 | 14/A/11:20 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1YNG_015 | 15/A/11:20 | tRNA D-loop | geometric HL_5B63_003 HL_20490.1 | |
| HL_1YNG_016 | 16/A/11:20 | No text annotation | geometric HL_5ID6_001 HL_69752.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1YNG_001 | 1/A/6:8, 1/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNG_002 | 2/A/6:8, 2/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNG_003 | 3/A/6:8, 3/A/23:26 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.3 | |
| IL_1YNG_004 | 4/A/6:8, 4/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNG_005 | 5/A/6:8, 5/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNG_006 | 6/A/6:8, 6/A/23:26 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.3 | |
| IL_1YNG_007 | 7/A/6:8, 7/A/23:26 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_1YNG_008 | 8/A/6:8, 8/A/23:26 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_1YNG_018 | 9/A/7:8, 9/A/23:25 | Major groove platform | geometric IL_7A0S_073 IL_48076.9 | |
| IL_1YNG_010 | 10/A/6:8, 10/A/23:26 | Isolated non-canonical cWW pair | geometric IL_4V88_457 NA | |
| IL_1YNG_011 | 11/A/6:8, 11/A/23:26 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_36931.3 | |
| IL_1YNG_012 | 12/A/6:8, 12/A/23:26 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_1YNG_013 | 13/A/6:8, 13/A/23:26 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA | |
| IL_1YNG_017 | 14/A/6:8, 14/A/23:26 | No text annotation | geometric IL_8C3A_419 NA | |
| IL_1YNG_014 | 14/A/7:8, 14/A/23:25 | No text annotation | ||
| IL_1YNG_015 | 15/A/6:8, 15/A/23:26 | No text annotation | ||
| IL_1YNG_019 | 16/A/7:8, 16/A/23:25 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1YNG_009 | Major groove platform with extra cWW | ||
| IL_1YNG_016 | Multiple bulged bases, near cWW |
Valid loops
No loops found
Problematic loops
No problematic loops
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