HL_1Z58_001

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGAUUACCUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_001 not in the Motif Atlas

Geometric match to HL_8VTW_013

Geometric discrepancy: 0.3113

The information below is about HL_8VTW_013

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1Z58|1|2|G|57
1Z58|1|2|C|58
1Z58|1|2|G|59
1Z58|1|2|A|60
1Z58|1|2|U|61
1Z58|1|2|U|62
1Z58|1|2|A|63
1Z58|1|2|C|64
1Z58|1|2|C|65
1Z58|1|2|U|66
1Z58|1|2|G|67
1Z58|1|2|C|68

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains