HL_1Z58_009

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1Z58|1|2|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1685

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1Z58|1|2|C|316
1Z58|1|2|U|317
1Z58|1|2|G|318
1Z58|1|2|G|319
1Z58|1|2|A|320
1Z58|1|2|A|321
1Z58|1|2|A|322
1Z58|1|2|G|323

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains