HL_1Z58_050

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1Z58|1|2|A|2247, 1Z58|1|2|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_050 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1672

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1Z58|1|2|C|2243
1Z58|1|2|C|2244
1Z58|1|2|A|2245
1Z58|1|2|A|2246
1Z58|1|2|A|2247
1Z58|1|2|A|2248
1Z58|1|2|U|2249
1Z58|1|2|G|2250
1Z58|1|2|U|2251
1Z58|1|2|A|2252
1Z58|1|2|A|2253
1Z58|1|2|C|2254
1Z58|1|2|G|2255

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains