HL_23WI_003

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_003 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2217

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

23WI|1|5|C|1092
23WI|1|5|G|1093
23WI|1|5|U|1094
23WI|1|5|A|1095
23WI|1|5|A|1096
23WI|1|5|U|1097
23WI|1|5|A|1098
23WI|1|5|G|1099

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6