HL_23WI_006
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_006 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.1625
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
23WI|1|5|G|1281
23WI|1|5|U|1282
23WI|1|5|G|1283
23WI|1|5|A|1284
23WI|1|5|A|1285
23WI|1|5|A|1286
23WI|1|5|A|1287
23WI|1|5|G|1288
23WI|1|5|C|1289
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- 50S ribosomal protein L22
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