HL_23WI_007
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAAUC
- Length
- 7 nucleotides
- Bulged bases
- 23WI|1|5|U|1325, 23WI|1|5|U|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_007 not in the Motif Atlas
- Homologous match to HL_7A0S_033
- Geometric discrepancy: 0.2011
- The information below is about HL_7A0S_033
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_49081.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
23WI|1|5|G|1324
23WI|1|5|U|1325
23WI|1|5|U|1326
23WI|1|5|A|1327
23WI|1|5|A|1328
23WI|1|5|U|1329
23WI|1|5|C|1330
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- 50S ribosomal protein L22
Coloring options: