HL_23WI_022

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

23WI|1|5|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_022 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1129

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.3

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

23WI|1|5|G|1910
23WI|1|5|PSU|1911
23WI|1|5|A|1912
23WI|1|5|A|1913
23WI|1|5|C|1914
23WI|1|5|3TD|1915
23WI|1|5|A|1916
23WI|1|5|PSU|1917
23WI|1|5|A|1918
23WI|1|5|A|1919
23WI|1|5|C|1920

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA