HL_23WI_035

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

23WI|1|5|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_035 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.146

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

23WI|1|5|U|2528
23WI|1|5|G|2529
23WI|1|5|A|2530
23WI|1|5|A|2531
23WI|1|5|G|2532
23WI|1|5|U|2533
23WI|1|5|A|2534
23WI|1|5|G|2535

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6