HL_23WI_052

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

23WI|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_052 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1254

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

23WI|1|A|C|305
23WI|1|A|U|306
23WI|1|A|G|307
23WI|1|A|G|308
23WI|1|A|A|309
23WI|1|A|A|310
23WI|1|A|A|311
23WI|1|A|G|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain U

Large ribosomal subunit protein uL24