HL_23WI_072

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_072 not in the Motif Atlas

Geometric match to HL_9PN5_103

Geometric discrepancy: 0.3279

The information below is about HL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

23WI|1|a|U|157
23WI|1|a|G|158
23WI|1|a|G|159
23WI|1|a|A|160
23WI|1|a|A|161
23WI|1|a|A|162
23WI|1|a|C|163
23WI|1|a|G|164

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain P

50S ribosomal protein L19

Chain t

Small ribosomal subunit protein bS20