HL_23WI_083

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_083 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.3257

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

23WI|1|a|G|617
23WI|1|a|C|618
23WI|1|a|U|619
23WI|1|a|C|620
23WI|1|a|A|621
23WI|1|a|A|622
23WI|1|a|C|623

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

30S ribosomal protein S16